Publications

Assessing the associations between known genetic variants and substance use in people with HIV in the United States
Cameron B Haas, Kristina M Jordahl, Robin M Nance, Bridget M Whitney, Lu Wang, Joseph AC Delaney, Stephanie Ruderman, Tongqiu Jia, Wm Christopher Mathews, Michael S Saag, Sulggi A Lee, Sonia Napravnik, Jeffrey M Jacobson, Geetanjali Chander, Elizabeth M McCall, Richard D Moore, Kenneth H Mayer, Shubhabrata Mukherjee, Won Jun Lee, Paul K Crane, Heidi Crane, Inga Peter, Sara Lindström. Plos one. 2023.

Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
Sarah N Wright, Brittany S Leger, Sara Brin Rosenthal, Sophie N Liu, Tongqiu Jia, Apurva S Chitre, Oksana Polesskaya, Katie Holl, Jianjun Gao, Riyan Cheng, Angel Garcia Martinez, Anthony George, Alexander F Gileta, Wenyan Han, Alesa H Netzley, Christopher P King, Alexander Lamparelli, Connor Martin, Celine L St Pierre, Tengfei Wang, Hannah Bimschleger, Jerry Richards, Keita Ishiwari, Hao Chen, Shelly B Flagel, Paul Meyer, Terry E Robinson, Leah C Solberg Woods, Jason F Kreisberg, Trey Ideker, Abraham A Palmer. Cell reports. 2023.

Thousands of missing variants in the UK Biobank are recoverable by genome realignment
Tongqiu Jia, Brenton Munson, Hana Lango Allen, Trey Ideker, and Amit R. Majithia. Annals of human genetics. 2020.

A Fast and Flexible Framework for Network-Assisted Genomic Association
Daniel E Carlin, Samson H Fong, Yue Qin, Tongqiu Jia, Justin K Huang, Bokan Bao, Chao Zhang, Trey Ideker. iScience. 2019.

Fast near-whole–brain imaging in adult Drosophila during responses to stimuli and behavior
Sophie Aimon, Takeo Katsuki, Tongqiu Jia, Logan Grosenick, Michael Broxton, Karl Deisseroth, Terrence J Sejnowski, Ralph J Greenspan. PLoS biology. 2019.

pyNBS: a Python implementation for network-based stratification of tumor mutations
Justin K Huang, Tongqiu Jia, Daniel E Carlin, Trey Ideker. Bioinformatics. 2018.